CDS

Accession Number TCMCG017C10421
gbkey CDS
Protein Id OMP01051.1
Location join(4956..5070,5375..5745,5988..6041,6132..6200,6336..8531,8936..9007,9093..9494)
GeneID InterPro:IPR001900
Organism Corchorus olitorius
locus_tag COLO4_12189

Protein

Length 1092aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA215141, BioSample:SAMN03160584
db_source AWUE01014851.1
Definition Ribonuclease II/R [Corchorus olitorius]
Locus_tag COLO4_12189

EGGNOG-MAPPER Annotation

COG_category J
Description 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of cytoplasmic mRNAs that have been deadenylated and subsequently uridylated at their 3'
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko01000        [VIEW IN KEGG]
ko03019        [VIEW IN KEGG]
KEGG_ko ko:K18758        [VIEW IN KEGG]
EC -
KEGG_Pathway -
GOs GO:0000070        [VIEW IN EMBL-EBI]
GO:0000175        [VIEW IN EMBL-EBI]
GO:0000178        [VIEW IN EMBL-EBI]
GO:0000278        [VIEW IN EMBL-EBI]
GO:0000280        [VIEW IN EMBL-EBI]
GO:0000287        [VIEW IN EMBL-EBI]
GO:0000291        [VIEW IN EMBL-EBI]
GO:0000819        [VIEW IN EMBL-EBI]
GO:0000932        [VIEW IN EMBL-EBI]
GO:0000956        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003676        [VIEW IN EMBL-EBI]
GO:0003723        [VIEW IN EMBL-EBI]
GO:0003727        [VIEW IN EMBL-EBI]
GO:0003824        [VIEW IN EMBL-EBI]
GO:0004518        [VIEW IN EMBL-EBI]
GO:0004527        [VIEW IN EMBL-EBI]
GO:0004532        [VIEW IN EMBL-EBI]
GO:0004540        [VIEW IN EMBL-EBI]
GO:0005488        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0005844        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006364        [VIEW IN EMBL-EBI]
GO:0006396        [VIEW IN EMBL-EBI]
GO:0006401        [VIEW IN EMBL-EBI]
GO:0006402        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0006996        [VIEW IN EMBL-EBI]
GO:0007049        [VIEW IN EMBL-EBI]
GO:0007059        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0008187        [VIEW IN EMBL-EBI]
GO:0008266        [VIEW IN EMBL-EBI]
GO:0008285        [VIEW IN EMBL-EBI]
GO:0008408        [VIEW IN EMBL-EBI]
GO:0009056        [VIEW IN EMBL-EBI]
GO:0009057        [VIEW IN EMBL-EBI]
GO:0009892        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010467        [VIEW IN EMBL-EBI]
GO:0010468        [VIEW IN EMBL-EBI]
GO:0010586        [VIEW IN EMBL-EBI]
GO:0010587        [VIEW IN EMBL-EBI]
GO:0010605        [VIEW IN EMBL-EBI]
GO:0010629        [VIEW IN EMBL-EBI]
GO:0016043        [VIEW IN EMBL-EBI]
GO:0016070        [VIEW IN EMBL-EBI]
GO:0016071        [VIEW IN EMBL-EBI]
GO:0016072        [VIEW IN EMBL-EBI]
GO:0016787        [VIEW IN EMBL-EBI]
GO:0016788        [VIEW IN EMBL-EBI]
GO:0016796        [VIEW IN EMBL-EBI]
GO:0016896        [VIEW IN EMBL-EBI]
GO:0019222        [VIEW IN EMBL-EBI]
GO:0019439        [VIEW IN EMBL-EBI]
GO:0019827        [VIEW IN EMBL-EBI]
GO:0022402        [VIEW IN EMBL-EBI]
GO:0022613        [VIEW IN EMBL-EBI]
GO:0032501        [VIEW IN EMBL-EBI]
GO:0032502        [VIEW IN EMBL-EBI]
GO:0032991        [VIEW IN EMBL-EBI]
GO:0034470        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0034655        [VIEW IN EMBL-EBI]
GO:0034660        [VIEW IN EMBL-EBI]
GO:0034661        [VIEW IN EMBL-EBI]
GO:0035770        [VIEW IN EMBL-EBI]
GO:0036464        [VIEW IN EMBL-EBI]
GO:0042127        [VIEW IN EMBL-EBI]
GO:0042254        [VIEW IN EMBL-EBI]
GO:0043167        [VIEW IN EMBL-EBI]
GO:0043169        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043228        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043232        [VIEW IN EMBL-EBI]
GO:0043632        [VIEW IN EMBL-EBI]
GO:0044085        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044248        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044265        [VIEW IN EMBL-EBI]
GO:0044270        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044444        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0046700        [VIEW IN EMBL-EBI]
GO:0046872        [VIEW IN EMBL-EBI]
GO:0048285        [VIEW IN EMBL-EBI]
GO:0048519        [VIEW IN EMBL-EBI]
GO:0048523        [VIEW IN EMBL-EBI]
GO:0050789        [VIEW IN EMBL-EBI]
GO:0050794        [VIEW IN EMBL-EBI]
GO:0051276        [VIEW IN EMBL-EBI]
GO:0051304        [VIEW IN EMBL-EBI]
GO:0051306        [VIEW IN EMBL-EBI]
GO:0060255        [VIEW IN EMBL-EBI]
GO:0065007        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0071840        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0090305        [VIEW IN EMBL-EBI]
GO:0090501        [VIEW IN EMBL-EBI]
GO:0090503        [VIEW IN EMBL-EBI]
GO:0097159        [VIEW IN EMBL-EBI]
GO:0098727        [VIEW IN EMBL-EBI]
GO:0098813        [VIEW IN EMBL-EBI]
GO:0140014        [VIEW IN EMBL-EBI]
GO:0140098        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901361        [VIEW IN EMBL-EBI]
GO:1901363        [VIEW IN EMBL-EBI]
GO:1901575        [VIEW IN EMBL-EBI]
GO:1902494        [VIEW IN EMBL-EBI]
GO:1903047        [VIEW IN EMBL-EBI]
GO:1905354        [VIEW IN EMBL-EBI]
GO:1990074        [VIEW IN EMBL-EBI]
GO:1990904        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGAGGGGTGGAAACGGGGTTGCGGAGCAATCTGTGATTGTTGAGAGGGTGGAGGATGCTGATAAGGAGAAGAAGAAGAAACGCCGGTCTAATCGCCGATCCAAGCACAACTCAGTTAATGAAGCTCGTGGCGAGGATAGCTTGAAGAATGGAGACAAAACAAAAAGTTTGACACAATCTATAAGTTCTTCTTCTTCTTCATTGAAACAAGGATTGGATATGGCTTTGAAGGAGCAGTCTCCTGATAGAGCATCCGATGTTGCGTTTTGTTCCATGCCTACAATGCATATAAATGAACAGGTTGTCTCAGATAGTGGTGATAACATCATTGATGTTAGTGGAAGAACATTTTCAAATTCATGTCCTGAACCATCTTCTAAAATGGGCATAGATGGTTTTCCTCCTTTCCATCAGGTTGAGGGTTTTGCTCGAAAGAAATTGTTTGCTCCGTTCTGGCCCGTGGAGACTGTTAATGATGCATTAGAGAAAGGGGAAGCTTTCAAAGCATTGTTTCGTGTGAATGCTCACAACCGATTTGAGGCATATTGCAAAATTGATGGGGTACCTACAGATGTTCTTATCAGTGGAATTTCTTCGCAGAATAGAGCTGTTGAGGGAGATATTGTGGTTATTAAGGTTGATCCTTTGGGATTGTGGACCAAGATGAAAGGATCAAATGGGTCCTCGAACAATTCTGCACAGATAGAAGATTGTAATATAGTCCAAGAAGTCAATGGACTGGCTGGTAATAGCTACAAAGGTAAGGGAAAGGTAGATGGGGATTGTGTGAATGCTCATAGTAAAAATGGAGTTCCCATTGAGAAAGGGTTTTATGATGAGACAGAAATGACTAGAGCATCAGCTTACAATTATGTTAATGGGCATCACCAATCTAGTTCAGATTCCTTGCATGTGGGTTTTCTTCCTGGGCAGAATGAAGGCATAAATTCAGTGGAAAGCTTGGCTGCCTCGACTAGTCAATTCCCCTTGAAACGACCAACTGGGAGGGTTGTTGCCATTGTTGAAAAGTCTCTTCGACGAGATGCTATCGTTGGTTTTCTTAATGTTAAGCAGTGGTTTTCATATCGACAACTTTATGCAAAAGATGCAAGGAAAATTTCTGCAAATTTTGACAATGAGTATGTAACATTGACCCCAACTGATCCAAGATTTCCCAAAATGATTGTTTTGGTGAGAGACTTGCCTGACTGCATAAAGAAAAGGTTGGAAGATGGTGATGTAACAATTGAGAGGGAGTTGCTGGCTGCCCAAATTGAAGATTGGACTACAGAAAGTCCTTTTCCTCAAGCTCGTGTCTCTCATACTTTTGGACGTGGTGGTGAATTGGAACCTCAGATTAATGCAATCCTATATCAAAATGCAATACCTTGTGCTGATTTTCCTTCTGAAGCACTTACTTGTCTTCCAAATATTCCTTGGGAAATCCCACCGGAGGAATTTCAAACTAGAGAAGATCTTAGAGACTTGTGTGTGTTTACTATTGACCCTCCTACAGCATCTGATCTTGATGATGCTTTATCTGTTGAAAAGCTATCAAATGACTCCTTTAGAGTAGGTGTACACATTGCAGATGTCTCGTACTTTGTGTTACCAAACACAGCCTTAGACATAGAAGCTCAGATTCGATCAACCAGTGTGTACATGTTGCAAAGGAAGACACAGATGTTGCCATCATTGCTTTCAGAAAAGCTTGGTTCACTTAATCCTGGAGTAGATAGGCTTGCATTTTCTATATTTTGGGATTTGAGCAGCAGAGGAGATGTTTTGGATCGTTGGATTGGCCGTACAGTTATAAGGTCTTGTTGTAAGCTTTCATATAAACATGCGCAAGACATCATTGAAGGGATAATTGATGTGGAGAAATTGAATACTTTAGAAGAATGCCCCCAGTTGCATGGCCAATTTGAATGGACTGATATTATTAGATCTGTTAAATATCTAAATGATATTTCAAAATCTTTGAAGAGGAAAAGATTTAATGATGGTGCCCTACAGCTTGAAAGCTCCAAAGTTCTTTACTTATTTGATGAATATGGGGTTCCATATGATAGTAGGCCAAGTGAGCAGATGGATTCAAATTTTCTTGTTGAAGAGTTCATGCTTTTGGCAAATATGACAGCTGCAGAAGTAATATCAAGAACTTTTCCTGATAGTGCGTTATTACGGAGGCATCCTGAACCTAATATGAGAAAGCTCAAAGAGTTTGAAGCATTTTGTCGCAAGCATGGTCTAGGATTGGATACTTCCTCTTCTGGCAAGTTTCATCAATCCTTACAGAAAATAAGGGAAAAACTCAAGGATGATCCTGTTCTTTTCAATATTCTCATGTCATATGCTTCAAAGCCAATGCAATTAGCTACTTACTTCTGCAGTGGTGAGTTAAAGGATAATGTGAATGATTGGGGTCATTATGGATTGGCTGTTCCCCTCTATACACATTTTACATCACCACTACGTCGATATCCAGACATTGTGGTGCATCGTACATTGGCTGCTGTAATTGAAGCTGAGGAGTTGTATCTGAAGCATAAAGGGTTGGTTAAAGATATCAATGGGGAGGAAGTATCAAGAAGGTGTTTCACTGGTATTTATTTTGATAAGGAAGCTGCAGCATCTCCAGAAGGGAAGGAAGCATTAACTATTGCTGCATTGAAACATGGTATTCCTTCCTCTGAACTACTTGCTGATGTTGCTGCATATTGCAATAAAAGAAAGCTGGCCAGTAGGAATGCTGAAGATGCCTGTGAGAAACTCTATATGTGGGTTTTCCTAAAGAAAACGGAGATTTTGTTGTCTGATGCTAGAGTTTTGGGATTGGGGCCAAGATTTATGTCTGTTTATATCCCGAAGCTGGCTATTGAGAGACGGATATACTATGATGAAGTTGAAGGGTTATCTGTAGAATGGCTTGAGTCTACTTCAACATTGGTGCTTAATTTATCTGGCCAAAAACGCTTGTTCAGGAAAGGTGGCTTGGGGAATTATATGGCTCTAGGAAATTTTGCATGCATTGTAAATCCTTATGATCTAAGTGTGGAAATGGATATTGTTGATGACCCTGATAAAACATCCATGAGGGATAATGGGGTGGCATCCCCAGATTTGGAGCCAATCTCAAAATCTTGGATTGATCCTGGAACTTTCCCTCTGACAGTTCGTCTACTTTCAACAATTCCTGTGGCACTGTATGCAATTGGTGGTGATGATGGACCCCTCGATATTGGGGTGCGCTTATACATGAGTTCATATTTGAAGTAA
Protein:  
MRGGNGVAEQSVIVERVEDADKEKKKKRRSNRRSKHNSVNEARGEDSLKNGDKTKSLTQSISSSSSSLKQGLDMALKEQSPDRASDVAFCSMPTMHINEQVVSDSGDNIIDVSGRTFSNSCPEPSSKMGIDGFPPFHQVEGFARKKLFAPFWPVETVNDALEKGEAFKALFRVNAHNRFEAYCKIDGVPTDVLISGISSQNRAVEGDIVVIKVDPLGLWTKMKGSNGSSNNSAQIEDCNIVQEVNGLAGNSYKGKGKVDGDCVNAHSKNGVPIEKGFYDETEMTRASAYNYVNGHHQSSSDSLHVGFLPGQNEGINSVESLAASTSQFPLKRPTGRVVAIVEKSLRRDAIVGFLNVKQWFSYRQLYAKDARKISANFDNEYVTLTPTDPRFPKMIVLVRDLPDCIKKRLEDGDVTIERELLAAQIEDWTTESPFPQARVSHTFGRGGELEPQINAILYQNAIPCADFPSEALTCLPNIPWEIPPEEFQTREDLRDLCVFTIDPPTASDLDDALSVEKLSNDSFRVGVHIADVSYFVLPNTALDIEAQIRSTSVYMLQRKTQMLPSLLSEKLGSLNPGVDRLAFSIFWDLSSRGDVLDRWIGRTVIRSCCKLSYKHAQDIIEGIIDVEKLNTLEECPQLHGQFEWTDIIRSVKYLNDISKSLKRKRFNDGALQLESSKVLYLFDEYGVPYDSRPSEQMDSNFLVEEFMLLANMTAAEVISRTFPDSALLRRHPEPNMRKLKEFEAFCRKHGLGLDTSSSGKFHQSLQKIREKLKDDPVLFNILMSYASKPMQLATYFCSGELKDNVNDWGHYGLAVPLYTHFTSPLRRYPDIVVHRTLAAVIEAEELYLKHKGLVKDINGEEVSRRCFTGIYFDKEAAASPEGKEALTIAALKHGIPSSELLADVAAYCNKRKLASRNAEDACEKLYMWVFLKKTEILLSDARVLGLGPRFMSVYIPKLAIERRIYYDEVEGLSVEWLESTSTLVLNLSGQKRLFRKGGLGNYMALGNFACIVNPYDLSVEMDIVDDPDKTSMRDNGVASPDLEPISKSWIDPGTFPLTVRLLSTIPVALYAIGGDDGPLDIGVRLYMSSYLK